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    xkr8.1 XK related 8, tandem duplicate 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100535571, updated on 27-Mar-2024

    Summary

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    Official Symbol
    xkr8.1provided by ZNC
    Official Full Name
    XK related 8, tandem duplicate 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110106-1
    See related
    Ensembl:ENSDARG00000004498 AllianceGenome:ZFIN:ZDB-GENE-110106-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR8 (XK related 8). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (24982380..24989358, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (25398159..25404499, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438129 Neighboring gene XK related 8, tandem duplicate 4 Neighboring gene XK related 8, tandem duplicate 2 Neighboring gene XK-related protein 8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Concomitant duplications of opioid peptide and receptor genes before the origin of jawed vertebrates. Sundström G, et al. PLoS One, 2010 May 6. PMID 20463905, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in apoptotic process involved in development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in engulfment of apoptotic cell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phosphatidylserine exposure on apoptotic cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    XK-related protein 8
    Names
    XK, Kell blood group complex subunit-related family, member 8, tandem duplicate 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      24982380..24989358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294269.3 → XP_009292544.1  XK-related protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AK91
      Conserved Domains (1) summary
      pfam09815
      Location:16 → 267
      XK-related; XK-related protein

    2. XM_003200602.5 → XP_003200650.2  XK-related protein 8 isoform X1

      UniProtKB/TrEMBL
      A0A8M1RP22, E7F2E5
      Related
      ENSDARP00000094808.4, ENSDART00000104033.5
      Conserved Domains (1) summary
      pfam09815
      Location:16 → 344
      XK-related; XK-related protein
    Nucleotide Protein Strain
    Heading Accession and Version

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