dnmbp dynamin binding protein [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: dnmbpprovided by Xenbase
Official Full Name: dynamin binding proteinprovided by Xenbase
Primary source: Xenbase:XB-GENE-967684
See related: Ensembl:ENSXETG00000003739
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: tuba
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	7	NC_030683.2 (35482231..35550885, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	7	NC_030683.1 (27242737..27311317, complement)

Chromosome 7 - NC_030683.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables guanyl-nucleotide exchange factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within intracellular signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi stack	IEA Inferred from Electronic Annotation more info
located_in anchoring junction	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in synapse	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: dynamin-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

35482231..35550885 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_004915871.4 → XP_004915928.1 dynamin-binding protein isoform X1

See identical proteins and their annotated locations for XP_004915928.1

UniProtKB/TrEMBL

A0A8J0R301, F6TRA3

Related

ENSXETP00000008093.5, ENSXETT00000008093.5

Conserved Domains (8) summary

cd07589
Location:999 → 1187

BAR_DNMBP; The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

cd11794
Location:6 → 56

SH3_DNMBP_N1; First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd11795
Location:70 → 123

SH3_DNMBP_N2; Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd11796
Location:148 → 198

SH3_DNMBP_N3; Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd11797
Location:251 → 300

SH3_DNMBP_N4; Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd11798
Location:1271 → 1327

SH3_DNMBP_C1; First C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd12141
Location:1485 → 1541

SH3_DNMBP_C2; Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

cd00160
Location:767 → 947

RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
XM_004915872.4 → XP_004915929.1 dynamin-binding protein isoform X2

UniProtKB/TrEMBL

A0A6I8Q517

Related

ENSXETP00000067528.2, ENSXETT00000103421.2

Conserved Domains (5) summary

cd07589
Location:722 → 910

BAR_DNMBP; The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein

PHA02896
Location:8 → 206

PHA02896; A-type inclusion like protein; Provisional

cd11798
Location:994 → 1050

SH3_DNMBP_C1; First C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

cd12141
Location:1208 → 1264

SH3_DNMBP_C2; Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

pfam00621
Location:493 → 671

RhoGEF; RhoGEF domain