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    XB6038542 uncharacterized XB6038542 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496911, updated on 8-Mar-2024

    Summary

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    Symbol
    XB6038542provided by Xenbase
    Full Name
    uncharacterized XB6038542provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6038543
    See related
    Ensembl:ENSXETG00000041224
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human all
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    Genomic context

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    See XB6038542 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    74
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (36405816..36544109)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (31568317..31709743, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene stannin Neighboring gene lipopolysaccharide-induced TNF factor Neighboring gene RecQ mediated genome instability 2 Neighboring gene suppressor of cytokine signaling 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100496911

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      36405816..36544109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031893160.1 → XP_031749020.1  uncharacterized protein LOC100496911 isoform X1

      UniProtKB/TrEMBL
      A0A8J1IW88
      Conserved Domains (4) summary
      pfam08742
      Location:3808 → 3867
      C8; C8 domain
      pfam09172
      Location:608 → 927
      DUF1943; Domain of unknown function (DUF1943)
      cl02516
      Location:3629 → 3771
      VWD; von Willebrand factor type D domain
      cl26969
      Location:41 → 575
      Vitellogenin_N; Lipoprotein amino terminal region

    2. XM_002941059.5 → XP_002941105.4  uncharacterized protein LOC100496911 isoform X2

      UniProtKB/TrEMBL
      A0A6I8SRL5
      Related
      ENSXETP00000097409.2, ENSXETT00000088352.2
      Conserved Domains (4) summary
      pfam08742
      Location:3807 → 3866
      C8; C8 domain
      pfam09172
      Location:608 → 927
      DUF1943; Domain of unknown function (DUF1943)
      cl02516
      Location:3628 → 3770
      VWD; von Willebrand factor type D domain
      cl26969
      Location:41 → 575
      Vitellogenin_N; Lipoprotein amino terminal region

    RNA

    1. XR_004220452.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases