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    ell3 elongation factor RNA polymerase II-like 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100492932, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ell3provided by Xenbase
    Official Full Name
    elongation factor RNA polymerase II-like 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-999062
    See related
    Ensembl:ENSXETG00000027613
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See ell3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (107452848..107502220, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (97492723..97547048, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 1 like Neighboring gene protein disulfide isomerase family A member 3 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP8 Neighboring gene small EDRK-rich factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translational elongation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II elongation factor ELL3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      107452848..107502220 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002932261.5 → XP_002932307.1  RNA polymerase II elongation factor ELL3

      UniProtKB/TrEMBL
      A0A6I8PMX8
      Related
      ENSXETP00000057519.3, ENSXETT00000057519.4
      Conserved Domains (2) summary
      pfam07303
      Location:503 → 604
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:20 → 291
      ELL; RNA polymerase II elongation factor ELL

    RNA

    1. XR_208412.3 RNA Sequence

      Related
      ENSXETT00000088423.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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