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    prrc2b proline-rich coiled-coil 2B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100492119, updated on 8-Mar-2024

    Summary

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    Official Symbol
    prrc2bprovided by Xenbase
    Official Full Name
    proline-rich coiled-coil 2Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5956342
    See related
    Ensembl:ENSXETG00000001480
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    bat2l; LQFBS-1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (12263605..12310142, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (6278784..6323855)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 1 Neighboring gene protein-O-mannosyltransferase 1 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene U5 spliceosomal RNA Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene family with sequence similarity 78 member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein PRRC2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      12263605..12310142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012968984.3 → XP_012824438.1  protein PRRC2B isoform X6

      UniProtKB/TrEMBL
      A0A6I8RDG4, A0A8J0SWT7
      Related
      ENSXETP00000070537.2, ENSXETT00000076953.2
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus

    2. XM_031890906.1 → XP_031746766.1  protein PRRC2B isoform X1

      UniProtKB/TrEMBL
      A0A6I8RVX0, A0A8J1IQI1
      Conserved Domains (2) summary
      pfam09606
      Location:1818 → 2128
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus

    3. XM_012968981.3 → XP_012824435.2  protein PRRC2B isoform X3

      UniProtKB/TrEMBL
      A0A6I8RVX0, A0A8J0SLL5

    4. XM_012968985.3 → XP_012824439.2  protein PRRC2B isoform X7

      UniProtKB/TrEMBL
      A0A6I8SPH2, A0A8J0STR9
      Related
      ENSXETP00000093958.2, ENSXETT00000102134.2
      Conserved Domains (2) summary
      pfam09606
      Location:1156 → 1466
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus

    5. XM_012968980.3 → XP_012824434.2  protein PRRC2B isoform X2

      UniProtKB/TrEMBL
      A0A6I8PJZ9, A0A6I8RVX0
      Related
      ENSXETP00000057234.4, ENSXETT00000057234.4
      Conserved Domains (2) summary
      pfam09606
      Location:1814 → 2124
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus

    6. XM_012968983.3 → XP_012824437.2  protein PRRC2B isoform X4

      UniProtKB/TrEMBL
      A0A6I8RVX0, A0A8J0SVH4
      Conserved Domains (2) summary
      pfam09606
      Location:1789 → 2099
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus

    7. XM_012968982.3 → XP_012824436.1  protein PRRC2B isoform X5

      UniProtKB/TrEMBL
      A0A6I8RDG4, A0A8J0SW81
      Conserved Domains (1) summary
      pfam07001
      Location:1 → 189
      BAT2_N; BAT2 N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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