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    LOC100489188 pancreas transcription factor 1 subunit alpha-like [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100489188, updated on 7-Sep-2023

    Summary

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    Official Symbol
    LOC100489188provided by Xenbase
    Official Full Name
    pancreas transcription factor 1 subunit alpha-likeprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-29079611
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (60755881..60757421)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (55646103..55647513)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene anterior gradient 1 Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene histone deacetylase 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit A10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pancreas transcription factor 1 subunit alpha-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      60755881..60757421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018097660.2 → XP_017953149.1  pancreas transcription factor 1 subunit alpha-like

      UniProtKB/TrEMBL
      A0A6I8S322, A0A8J0T7A8
      Conserved Domains (1) summary
      cd11416
      Location:80 → 142
      bHLH_TS_ceHLH13_like; basic helix-loop-helix (bHLH) domain found in Caenorhabditis elegans Helix-loop-helix protein 13 (HLH13) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases