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    LOC100485312 ficolin-2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100485312, updated on 25-Jan-2024

    Summary

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    Official Symbol
    LOC100485312provided by Xenbase
    Official Full Name
    ficolin-2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29077735
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (13027863..13040833)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (5401414..5430405)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene ficolin-1-like Neighboring gene ryncolin-1 Neighboring gene ficolin-1 Neighboring gene ficolin-1 Neighboring gene ficolin-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ficolin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      13027863..13040833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031903978.1 → XP_031759838.1  ficolin-2

      UniProtKB/TrEMBL
      A0A8J1JPN1
      Conserved Domains (2) summary
      cd00087
      Location:100 → 307
      FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
      pfam01391
      Location:52 → 91
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases