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    prpf8 pre-mRNA processing factor 8 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100380187, updated on 8-Mar-2024

    Summary

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    Official Symbol
    prpf8provided by Xenbase
    Official Full Name
    pre-mRNA processing factor 8provided by Xenbase
    Primary source
    Xenbase:XB-GENE-966799
    See related
    Ensembl:ENSXETG00000022259
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    prp8; rp13; hprp8; prpc8
    Orthologs
    human mouse all
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    Genomic context

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    See prpf8 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (45520770..45540892)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (40012553..40032526, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 15 Neighboring gene TLC domain containing 2 Neighboring gene uncharacterized LOC116408804 Neighboring gene protein kinase C delta type-like Neighboring gene protein kinase C delta type-like Neighboring gene uncharacterized LOC116408805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables U5 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA-processing-splicing factor 8
    Names
    PRP8 pre-mRNA processing factor 8 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      45520770..45540892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002936059.3 → XP_002936105.2  pre-mRNA-processing-splicing factor 8

      UniProtKB/TrEMBL
      A0A6I8SDE4, F6ZIA0
      Related
      ENSXETP00000048189.5, ENSXETT00000048189.5
      Conserved Domains (1) summary
      COG5178
      Location:27 → 2335
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]

    2. XM_004911666.4 → XP_004911723.2  pre-mRNA-processing-splicing factor 8

      UniProtKB/TrEMBL
      A0A6I8SDE4, F6ZIA0
      Conserved Domains (1) summary
      COG5178
      Location:27 → 2335
      PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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