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    Cd164l2 CD164 molecule like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359977, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Cd164l2provided by RGD
    Official Full Name
    CD164 molecule like 2provided by RGD
    Primary source
    RGD:2323068
    See related
    Ensembl:ENSRNOG00000009505 AllianceGenome:RGD:2323068
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle. Orthologous to human CD164L2 (CD164 molecule like 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 50.6), Testes (RPKM 30.7) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    5q36
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (150698662..150711622)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (145414805..145427747)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (151397798..151417690)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene WASP family member 2 Neighboring gene G protein-coupled receptor 3 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene synaptotagmin-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CD164 sialomucin-like 2 protein
    Names
    CD164 sialomucin-like 2
    sialomucin core protein 24-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271259.1 → NP_001258188.1  CD164 sialomucin-like 2 protein precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D3ZGM0
      Related
      ENSRNOP00000012626.2, ENSRNOT00000012626.6
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      150698662..150711622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039109100.2 → XP_038965028.1  CD164 sialomucin-like 2 protein isoform X3

      Conserved Domains (1) summary
      pfam05283
      Location:28 → 146
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    2. XM_063287027.1 → XP_063143097.1  CD164 sialomucin-like 2 protein isoform X4

    3. XM_039109094.2 → XP_038965022.1  CD164 sialomucin-like 2 protein isoform X1

      UniProtKB/TrEMBL
      D3ZGM0
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    4. XM_039109096.2 → XP_038965024.1  CD164 sialomucin-like 2 protein isoform X1

      UniProtKB/TrEMBL
      D3ZGM0
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    5. XM_063287026.1 → XP_063143096.1  CD164 sialomucin-like 2 protein isoform X2

      UniProtKB/TrEMBL
      A6ISW0

    6. XM_039109095.2 → XP_038965023.1  CD164 sialomucin-like 2 protein isoform X1

      UniProtKB/TrEMBL
      D3ZGM0
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    7. XM_039109097.2 → XP_038965025.1  CD164 sialomucin-like 2 protein isoform X1

      UniProtKB/TrEMBL
      D3ZGM0
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin

    8. XM_039109093.2 → XP_038965021.1  CD164 sialomucin-like 2 protein isoform X1

      UniProtKB/TrEMBL
      D3ZGM0
      Conserved Domains (1) summary
      pfam05283
      Location:53 → 171
      MGC-24; Multi-glycosylated core protein 24 (MGC-24), sialomucin
    Nucleotide Protein Strain
    Heading Accession and Version

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