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    cog1 component of oligomeric golgi complex 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100334475, updated on 27-Mar-2024

    Summary

    Official Symbol
    cog1provided by ZNC
    Official Full Name
    component of oligomeric golgi complex 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050302-128
    See related
    Ensembl:ENSDARG00000105131 AllianceGenome:ZFIN:ZDB-GENE-050302-128
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ft63e05; wu:ft63e05; wu:fu33h09
    Summary
    Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See cog1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (36402707..36419731, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (36260529..36277873, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha 13b Neighboring gene regulator of G protein signaling 9a Neighboring gene uncharacterized LOC103908705 Neighboring gene si:ch1073-443f11.2 Neighboring gene rogdi atypical leucine zipper

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    conserved oligomeric Golgi complex subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      36402707..36419731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002661160.6XP_002661206.3  conserved oligomeric Golgi complex subunit 1

      UniProtKB/TrEMBL
      A0A8M1RH56
      Related
      ENSDARP00000139736.2, ENSDART00000167896.3
      Conserved Domains (1) summary
      pfam08700
      Location:2089
      Vps51; Vps51/Vps67