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    opn7b opsin 7, group member b [ Danio rerio (zebrafish) ]

    Gene ID: 100332167, updated on 11-Apr-2024

    Summary

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    Official Symbol
    opn7bprovided by ZNC
    Official Full Name
    opsin 7, group member bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-850
    See related
    Ensembl:ENSDARG00000116584 AllianceGenome:ZFIN:ZDB-GENE-130530-850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Opn5L1d; novopsin-4
    Summary
    Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and testis. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (3776659..3852949, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (3834752..3859168, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885428 Neighboring gene small integral membrane protein 29 Neighboring gene high mobility group AT-hook 1a Neighboring gene uncharacterized LOC101885752 Neighboring gene uncharacterized LOC101885830

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Reverse optogenetics of G protein signaling by zebrafish non-visual opsin Opn7b for synchronization of neuronal networks. Karapinar R, et al. Nat Commun, 2021 Jul 23. PMID 34301944, Free PMC Article
    2. Two UV-Sensitive Photoreceptor Proteins, Opn5m and Opn5m2 in Ray-Finned Fish with Distinct Molecular Properties and Broad Distribution in the Retina and Brain. Sato K, et al. PLoS One, 2016. PMID 27167972, Free PMC Article
    3. Zebrafish Circadian Clock Entrainment and the Importance of Broad Spectral Light Sensitivity. Steindal IAF, et al. Front Physiol, 2020. PMID 32922310, Free PMC Article
    4. An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function. Davies WI, et al. Genome Res, 2015 Nov. PMID 26450929, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Reverse optogenetics of G protein signaling by zebrafish non-visual opsin Opn7b for synchronization of neuronal networks.
      Title: Reverse optogenetics of G protein signaling by zebrafish non-visual opsin Opn7b for synchronization of neuronal networks.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables G protein-coupled photoreceptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables photoreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cellular response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phototransduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within phototransduction IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    opsin 7, group member b; uncharacterized protein LOC100332167
    Names
    zmp:0000000847

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001316949.1 → NP_001303878.1  opsin 7, group member b

      Status: PROVISIONAL

      Source sequence(s)
      KT008418
      UniProtKB/TrEMBL
      A0A0N9NVV5, A0A8M1P7U5, E7FEE5
      Related
      ENSDARP00000146339.1, ENSDART00000183839.1
      Conserved Domains (1) summary
      cd15074
      Location:20 → 303
      7tmA_Opsin5_neuropsin; neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled receptors

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      3776659..3852949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021469716.1 → XP_021325391.1  uncharacterized protein LOC100332167 isoform X1

      UniProtKB/TrEMBL
      A0A0N9NVV5, A0A8M1P7U5, E7FEE5
      Conserved Domains (1) summary
      cd15074
      Location:20 → 303
      7tmA_Opsin5_neuropsin; neuropsin (Opsin-5), member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein
    Heading Accession and Version

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