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    znf318 zinc finger protein 318 [ Danio rerio (zebrafish) ]

    Gene ID: 100330539, updated on 27-Mar-2024

    Summary

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    Official Symbol
    znf318provided by ZNC
    Official Full Name
    zinc finger protein 318provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-251
    See related
    Ensembl:ENSDARG00000090054 AllianceGenome:ZFIN:ZDB-GENE-140106-251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF318 (zinc finger protein 318). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4307581..4333191, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4179083..4204688, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene male-enhanced antigen 1 Neighboring gene protein phosphatase 2, regulatory subunit B', delta Neighboring gene si:dkeyp-121d4.3 Neighboring gene SFT2 domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 318
    Names
    zmp:0000001291

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      4307581..4333191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005156510.4 → XP_005156567.1  zinc finger protein 318

      See identical proteins and their annotated locations for XP_005156567.1

      UniProtKB/TrEMBL
      A0A8M1RKK4, E7EYC3
      Conserved Domains (3) summary
      PHA02896
      Location:1083 → 1210
      PHA02896; A-type inclusion like protein; Provisional
      smart00451
      Location:927 → 961
      ZnF_U1; U1-like zinc finger
      cl15483
      Location:1863 → 1983
      Hid1; High-temperature-induced dauer-formation protein

    2. XM_002664090.6 → XP_002664136.3  zinc finger protein 318

      See identical proteins and their annotated locations for XP_002664136.3

      UniProtKB/TrEMBL
      A0A8M1RKK4, E7EYC3
      Related
      ENSDARP00000111802.1, ENSDART00000122406.3
      Conserved Domains (3) summary
      PHA02896
      Location:1083 → 1210
      PHA02896; A-type inclusion like protein; Provisional
      smart00451
      Location:927 → 961
      ZnF_U1; U1-like zinc finger
      cl15483
      Location:1863 → 1983
      Hid1; High-temperature-induced dauer-formation protein

    RNA

    1. XR_663160.3 RNA Sequence

    2. XR_002459827.1 RNA Sequence

    3. XR_002459826.1 RNA Sequence

    4. XR_663158.3 RNA Sequence

    5. XR_663157.3 RNA Sequence

    6. XR_663159.3 RNA Sequence

    7. XR_663156.3 RNA Sequence

    8. XR_663155.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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