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    si:ch211-218o21.4 si:ch211-218o21.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100320132, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-218o21.4provided by ZNC
    Official Full Name
    si:ch211-218o21.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-178
    See related
    Ensembl:ENSDARG00000079869 AllianceGenome:ZFIN:ZDB-GENE-081104-178
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in actin filament bundle assembly; actin filament polymerization; and regulation of actin cytoskeleton organization. Predicted to be active in neuron projection; stress fiber; and synapse. Orthologous to human FAM107A (family with sequence similarity 107 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (37046285..37055964, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (37013850..37023515, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5C Neighboring gene renin binding protein Neighboring gene zgc:162200 Neighboring gene renin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in actin filament polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of actin cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in stress fiber IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM107B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      37046285..37055964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357509.2 → XP_017212998.1  protein FAM107B isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z7V8

    2. XM_009304144.3 → XP_009302419.1  protein FAM107B isoform X1

      UniProtKB/TrEMBL
      A0A8M3AVE8
      Conserved Domains (1) summary
      pfam06625
      Location:72 → 180
      DUF1151; Protein of unknown function (DUF1151)

    3. XM_017357510.2 → XP_017212999.1  protein FAM107B isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z0P9
      Related
      ENSDARP00000100265.3, ENSDART00000111513.4
    Nucleotide Protein Strain
    Heading Accession and Version

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