cmtr1 cap methyltransferase 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: cmtr1provided by Xenbase
Official Full Name: cap methyltransferase 1provided by Xenbase
Primary source: Xenbase:XB-GENE-970204
See related: Ensembl:ENSXETG00000009964
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: ftsjd2
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	5	NC_030681.2 (2865477..2886303)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683939.1 (27656..40925)

Chromosome 5 - NC_030681.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables mRNA (nucleoside-2'-O-)-methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within 7-methylguanosine mRNA capping	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within methylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1

Names: FtsJ methyltransferase domain containing 2

NP_001123814.1

EC 2.1.1.57

XP_031757413.1

EC 2.1.1.57

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001130342.1 → NP_001123814.1 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1

See identical proteins and their annotated locations for NP_001123814.1

Status: PROVISIONAL

Source sequence(s)

BC167621

UniProtKB/TrEMBL

B3DLX8

Conserved Domains (2) summary

pfam01585
Location:88 → 130

G-patch; G-patch domain

pfam01728
Location:233 → 449

FtsJ; FtsJ-like methyltransferase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

2865477..2886303

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031901553.1 → XP_031757413.1 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1

UniProtKB/TrEMBL

A0A1B8XX56, A0A6I8R2T1, A0A6I8RNZ2, A0A6I8T1L0, A0A803KAX2

Related

ENSXETP00000100366.2, ENSXETT00000066691.2

Conserved Domains (4) summary

smart00456
Location:757 → 787

WW; Domain with 2 conserved Trp (W) residues

pfam01585
Location:88 → 130

G-patch; G-patch domain

pfam01728
Location:233 → 449

FtsJ; FtsJ-like methyltransferase

cl12015
Location:624 → 717

Adenylation_DNA_ligase_like; Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases