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    ccp110 centriolar coiled-coil protein 110kDa [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100170501, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ccp110provided by Xenbase
    Official Full Name
    centriolar coiled-coil protein 110kDaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-981330
    See related
    Ensembl:ENSXETG00000031398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cp110
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (31811601..31841872)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (25937317..25967584)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene BRCA1-associated ATM activator 1 Neighboring gene lysine (K)-specific demethylase 8 Neighboring gene glycerophosphodiester phosphodiesterase 1 Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene lysine-rich nucleolar protein 1 Neighboring gene IQ motif containing K

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within centriole replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within centrosome duplication IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of cytokinesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in centriole IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    centriolar coiled-coil protein of 110 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      31811601..31841872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012970857.3 → XP_012826311.2  centriolar coiled-coil protein of 110 kDa

      UniProtKB/TrEMBL
      A0A803JJC1, A0A803K6H0
      Related
      ENSXETP00000115964.1, ENSXETT00000111128.1
      Conserved Domains (1) summary
      pfam16025
      Location:32 → 104
      CALM_bind; Calcium-dependent calmodulin binding

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001130281.1: Suppressed sequence

      Description
      NM_001130281.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CCP110 (GeneID:9738).
    Nucleotide Protein Strain
    Heading Accession and Version

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