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    ap1b1 adaptor related protein complex 1 subunit beta 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100158536, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ap1b1provided by Xenbase
    Official Full Name
    adaptor related protein complex 1 subunit beta 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-984900
    See related
    Ensembl:ENSXETG00000016417
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (144870385..144892928)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (132432524..132454896)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene THO complex 5 Neighboring gene neurofilament heavy chain Neighboring gene RAS like family 10 member A Neighboring gene growth arrest specific 2 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AP-1 complex subunit beta-1
    Names
    adaptor related protein complex 1 beta 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127972.1 → NP_001121444.1  AP-1 complex subunit beta-1

      See identical proteins and their annotated locations for NP_001121444.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166197
      UniProtKB/TrEMBL
      A0A6I8SND5, B2GUA2, F7CWF1, L7N3B3
      Related
      ENSXETP00000035832.3, ENSXETT00000035832.5
      Conserved Domains (4) summary
      smart00809
      Location:726 → 826
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:835 → 945
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      144870385..144892928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956757.3 → XP_012812211.1  AP-1 complex subunit beta-1 isoform X1

      See identical proteins and their annotated locations for XP_012812211.1

      UniProtKB/TrEMBL
      A0A6I8SND5, B2GUA2, F7CWF1, L7N3B3
      Conserved Domains (4) summary
      smart00809
      Location:726 → 826
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:835 → 945
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region

    2. XM_012956756.3 → XP_012812210.1  AP-1 complex subunit beta-1 isoform X1

      See identical proteins and their annotated locations for XP_012812210.1

      UniProtKB/TrEMBL
      A0A6I8SND5, B2GUA2, F7CWF1, L7N3B3
      Conserved Domains (4) summary
      smart00809
      Location:726 → 826
      Alpha_adaptinC2; Adaptin C-terminal domain
      smart01020
      Location:835 → 945
      B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
      sd00044
      Location:51 → 75
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:11 → 534
      Adaptin_N; Adaptin N terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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