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    cep120 centrosomal protein 120kDa [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145455, updated on 8-Mar-2024

    Summary

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    Official Symbol
    cep120provided by Xenbase
    Official Full Name
    centrosomal protein 120kDaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5872143
    See related
    Ensembl:ENSXETG00000010260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ccdc100
    Orthologs
    human mouse all
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    Genomic context

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    See cep120 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (169209013..169267315)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (160650125..160706376)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408392 Neighboring gene casein kinase 1 gamma 3 Neighboring gene PR domain 6 Neighboring gene peptidylprolyl isomerase C (cyclophilin C)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in centrosome cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in interkinetic nuclear migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of centriole elongation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    centrosomal protein of 120 kDa
    Names
    Coiled-coil domain-containing protein 100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126908.1 → NP_001120380.1  centrosomal protein of 120 kDa

      See identical proteins and their annotated locations for NP_001120380.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161079
      UniProtKB/Swiss-Prot
      B1H2P5
      UniProtKB/TrEMBL
      A0A6I8PJY7
      Related
      ENSXETP00000057155.6, ENSXETT00000057155.6
      Conserved Domains (6) summary
      pfam10473
      Location:697 → 850
      CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
      pfam12416
      Location:118 → 340
      DUF3668; Cep120 protein
      pfam13863
      Location:711 → 809
      DUF4200; Domain of unknown function (DUF4200)
      cd16269
      Location:839 → 850
      GBP_C; coiled coil [structural motif]
      cl14603
      Location:522 → 588
      C2; C2 domain
      cl20817
      Location:779 → 877
      GBP_C; Guanylate-binding protein, C-terminal domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      169209013..169267315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895599.1 → XP_031751459.1  centrosomal protein of 120 kDa isoform X1

      UniProtKB/TrEMBL
      A0A6I8QJS8, A0A6I8RDP0
      Related
      ENSXETP00000079202.2, ENSXETT00000079546.2
      Conserved Domains (3) summary
      TIGR02169
      Location:665 → 994
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam12416
      Location:117 → 339
      DUF3668; Cep120 protein
      cl14603
      Location:521 → 587
      C2; C2 domain

    2. XM_031895601.1 → XP_031751461.1  centrosomal protein of 120 kDa isoform X2

      UniProtKB/TrEMBL
      A0A6I8QJS8, A0A8J1J462
      Related
      ENSXETP00000069591.2, ENSXETT00000088994.2
      Conserved Domains (3) summary
      TIGR02169
      Location:659 → 988
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam12416
      Location:117 → 339
      DUF3668; Cep120 protein
      cl14603
      Location:515 → 581
      C2; C2 domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B1H2P5.1 GenPept UniProtKB/Swiss-Prot:B1H2P5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.