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    jph1 junctophilin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145273, updated on 8-Mar-2024

    Summary

    Official Symbol
    jph1provided by Xenbase
    Official Full Name
    junctophilin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-954753
    See related
    Ensembl:ENSXETG00000011834
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
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    Genomic context

    See jph1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (121465183..121515445, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (106597944..106651105, complement)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 70 Neighboring gene uncharacterized LOC100490089 Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene peptidase inhibitor 15

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126752.1NP_001120224.1  junctophilin-1

      See identical proteins and their annotated locations for NP_001120224.1

      Status: PROVISIONAL

      Source sequence(s)
      BC160387
      UniProtKB/TrEMBL
      A0A803KLK6, B1H0X6, F6RIK1
      Related
      ENSXETP00000025874.5, ENSXETT00000025874.5
      Conserved Domains (2) summary
      pfam02493
      Location:302324
      MORN; MORN repeat
      pfam05466
      Location:349540
      BASP1; Brain acid soluble protein 1 (BASP1 protein)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      121465183..121515445 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)