glb1l galactosidase, beta 1-like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: glb1lprovided by ZNC
Official Full Name: galactosidase, beta 1-likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050309-196
See related: Ensembl:ENSDARG00000029955 AllianceGenome:ZFIN:ZDB-GENE-050309-196
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7151535; wu:fj54e10; si:ch211-167j6.1
Summary: Predicted to enable beta-galactosidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in vacuole. Orthologous to human GLB1L (galactosidase beta 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 9

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (12847154..12866694)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (12875951..12895491)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables beta-galactosidase activity	IBA Inferred from Biological aspect of Ancestor more info
enables beta-galactosidase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity, acting on glycosyl bonds	IEA Inferred from Electronic Annotation more info
enables hydrolase activity, hydrolyzing O-glycosyl compounds	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in vacuole	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: beta-galactosidase-1-like protein

NP_001116328.1

EC 3.2.1.23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001122856.1 → NP_001116328.1 beta-galactosidase-1-like protein precursor

Status: PROVISIONAL

Source sequence(s)

CR752651

UniProtKB/TrEMBL

A0A8M1NIB2, F1QXE8

Related

ENSDARP00000047190.5, ENSDART00000047191.6

Conserved Domains (2) summary

pfam01301
Location:36 → 352

Glyco_hydro_35; Glycosyl hydrolases family 35

pfam13364
Location:536 → 603

BetaGal_dom4_5; Beta-galactosidase jelly roll domain