Format

Send to:

Choose Destination
    • Showing Current items.

    Zfp280b zinc finger protein 280B [ Mus musculus (house mouse) ]

    Gene ID: 64453, updated on 9-Sep-2018

    Summary

    Official Symbol
    Zfp280bprovided by MGI
    Official Full Name
    zinc finger protein 280Bprovided by MGI
    Primary source
    MGI:MGI:1927865
    See related
    Ensembl:ENSMUSG00000049764
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Suhw2; D10Jhu82e
    Expression
    Ubiquitous expression in placenta adult (RPKM 9.7), ovary adult (RPKM 7.3) and 28 other tissues See more

    Genomic context

    See Zfp280b in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (76032401..76042970)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (75495357..75505714)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40698 Neighboring gene predicted gene 5134 Neighboring gene microRNA 6409 Neighboring gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b Neighboring gene predicted gene 16222 Neighboring gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 280b
    Names
    suppressor of hairy wing homolog 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177475.3NP_803426.2  zinc finger protein 280b

      See identical proteins and their annotated locations for NP_803426.2

      Status: VALIDATED

      Source sequence(s)
      AC134382, AK079824, BC094574
      Consensus CDS
      CCDS23942.1
      UniProtKB/TrEMBL
      Q505F4
      Related
      ENSMUSP00000056340.6, ENSMUST00000061617.6
      Conserved Domains (2) summary
      sd00017
      Location:336357
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13836
      Location:53221
      DUF4195; Domain of unknown function (DUF4195)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      76032401..76042970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513942.2XP_006514005.1  zinc finger protein 280b isoform X1

      See identical proteins and their annotated locations for XP_006514005.1

      UniProtKB/TrEMBL
      Q505F4
      Conserved Domains (2) summary
      sd00017
      Location:336357
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13836
      Location:53221
      DUF4195; Domain of unknown function (DUF4195)
    2. XM_006513943.2XP_006514006.1  zinc finger protein 280b isoform X1

      See identical proteins and their annotated locations for XP_006514006.1

      UniProtKB/TrEMBL
      Q505F4
      Conserved Domains (2) summary
      sd00017
      Location:336357
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13836
      Location:53221
      DUF4195; Domain of unknown function (DUF4195)
    Support Center