Format

Send to:

Choose Destination
    • Showing Current items.

    Ostm1 osteopetrosis associated transmembrane protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 14628, updated on 5-Aug-2018

    Summary

    Official Symbol
    Ostm1provided by MGI
    Official Full Name
    osteopetrosis associated transmembrane protein 1provided by MGI
    Primary source
    MGI:MGI:2655574
    See related
    Ensembl:ENSMUSG00000038280 Vega:OTTMUSG00000019462
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    gl; HSPC019; 1200002H13Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 21.2), adrenal adult (RPKM 15.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ostm1 in Genome Data Viewer
    Location:
    10 B2; 10 22.89 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (42678916..42702462)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (42398723..42422261)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38491 Neighboring gene predicted gene 5036 Neighboring gene predicted gene 15199 Neighboring gene SEC63-like (S. cerevisiae)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    osteoclast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    osteopetrosis-associated transmembrane protein 1
    Names
    chloride channel 7 beta subunit
    grey lethal osteopetrosis

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172416.3NP_766004.1  osteopetrosis-associated transmembrane protein 1 precursor

      See identical proteins and their annotated locations for NP_766004.1

      Status: VALIDATED

      Source sequence(s)
      AF533890, AK044897, BB286500
      Consensus CDS
      CCDS23814.1
      UniProtKB/Swiss-Prot
      Q8BGT0
      Related
      ENSMUSP00000035516.5, OTTMUSP00000020987, ENSMUST00000040718.5, OTTMUST00000046478
      Conserved Domains (1) summary
      pfam09777
      Location:88332
      OSTMP1; Osteopetrosis-associated transmembrane protein 1 precursor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      42678916..42702462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center