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    Ctdsp1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [ Mus musculus (house mouse) ]

    Gene ID: 227292, updated on 12-Aug-2018

    Summary

    Official Symbol
    Ctdsp1provided by MGI
    Official Full Name
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1provided by MGI
    Primary source
    MGI:MGI:2654470
    See related
    Ensembl:ENSMUSG00000026176 Vega:OTTMUSG00000021740
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GIP; Nif3; SCP1; NLIIF
    Expression
    Ubiquitous expression in adrenal adult (RPKM 92.4), lung adult (RPKM 83.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ctdsp1 in Genome Data Viewer
    Location:
    1; 1 C3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (74391609..74397285)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (74438183..74443859)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 Neighboring gene microRNA 26b Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene CCR4-NOT transcription complex, subunit 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II CTD heptapeptide repeat phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphoprotein phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
    Names
    NLI-interacting factor 3
    golli-interacting protein
    nuclear LIM interactor-interacting factor 3
    small C-terminal domain phosphatase 1
    small CTD phosphatase 1
    NP_694728.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153088.2NP_694728.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1

      See identical proteins and their annotated locations for NP_694728.1

      Status: VALIDATED

      Source sequence(s)
      AK167390, BE948438, BP765657
      Consensus CDS
      CCDS15048.1
      UniProtKB/Swiss-Prot
      P58466
      UniProtKB/TrEMBL
      Q5I0X8
      Related
      ENSMUSP00000027367.7, OTTMUSP00000024307, ENSMUST00000027367.13, OTTMUST00000051577
      Conserved Domains (1) summary
      TIGR02251
      Location:90249
      HIF-SF_euk; Dullard-like phosphatase domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      74391609..74397285
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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