Format

Send to:

Choose Destination
    • Showing Current items.

    Fam20b family with sequence similarity 20, member B [ Mus musculus (house mouse) ]

    Gene ID: 215015, updated on 8-Dec-2018

    Summary

    Official Symbol
    Fam20bprovided by MGI
    Official Full Name
    family with sequence similarity 20, member Bprovided by MGI
    Primary source
    MGI:MGI:2443990
    See related
    Ensembl:ENSMUSG00000033557
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0475; C530043G21Rik
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 20.4), kidney adult (RPKM 16.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam20b in Genome Data Viewer
    Location:
    1; 1 G3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (156678545..156719027, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (158608702..158649041, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) Neighboring gene torsin family 3, member A Neighboring gene predicted gene, 39683 Neighboring gene PCNA-associated factor pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphotransferase activity, alcohol group as acceptor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphotransferase activity, alcohol group as acceptor ISO
    Inferred from Sequence Orthology
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    NOT protein phosphorylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proteoglycan biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    collagen-containing extracellular matrix HDA PubMed 
    extracellular space HDA PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    glycosaminoglycan xylosylkinase
    Names
    xylose kinase
    NP_663388.1
    XP_006496799.1
    XP_006496800.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145413.4NP_663388.1  glycosaminoglycan xylosylkinase

      See identical proteins and their annotated locations for NP_663388.1

      Status: PROVISIONAL

      Source sequence(s)
      AK132149
      Consensus CDS
      CCDS15395.1
      UniProtKB/Swiss-Prot
      Q8VCS3
      Related
      ENSMUSP00000083322.6, ENSMUST00000086153.7
      Conserved Domains (1) summary
      cd10470
      Location:188394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      156678545..156719027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496736.2XP_006496799.1  glycosaminoglycan xylosylkinase isoform X1

      See identical proteins and their annotated locations for XP_006496799.1

      UniProtKB/Swiss-Prot
      Q8VCS3
      Related
      ENSMUSP00000112534.1, ENSMUST00000122424.7
      Conserved Domains (1) summary
      cd10470
      Location:188394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase
    2. XM_006496737.2XP_006496800.1  glycosaminoglycan xylosylkinase isoform X1

      See identical proteins and their annotated locations for XP_006496800.1

      UniProtKB/Swiss-Prot
      Q8VCS3
      Conserved Domains (1) summary
      cd10470
      Location:188394
      FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase
    Support Center