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    Cnot11 CCR4-NOT transcription complex, subunit 11 [ Mus musculus (house mouse) ]

    Gene ID: 52846, updated on 2-Oct-2018

    Summary

    Official Symbol
    Cnot11provided by MGI
    Official Full Name
    CCR4-NOT transcription complex, subunit 11provided by MGI
    Primary source
    MGI:MGI:106580
    See related
    Ensembl:ENSMUSG00000003135 Vega:OTTMUSG00000026590
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C40; D1Bwg0212e; 2410015L18Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 16.9), ovary adult (RPKM 16.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Cnot11 in Genome Data Viewer
    Location:
    1 B; 1 18.31 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (39535802..39546881)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (39592647..39603726)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein 2 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene TBC1 domain family, member 8 Neighboring gene ribosomal protein L31 Neighboring gene small nucleolar RNA, C/D box 89 Neighboring gene predicted gene, 18446

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    gene silencing by RNA IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    CCR4-NOT complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CCR4-NOT transcription complex subunit 11
    Names
    UPF0760 protein C2orf29 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028043.3NP_082319.1  CCR4-NOT transcription complex subunit 11

      See identical proteins and their annotated locations for NP_082319.1

      Status: VALIDATED

      Source sequence(s)
      BC049091, DV649843
      Consensus CDS
      CCDS14906.1
      UniProtKB/Swiss-Prot
      Q9CWN7
      Related
      ENSMUSP00000003219.8, ENSMUST00000003219.13
      Conserved Domains (1) summary
      pfam10155
      Location:366490
      DUF2363; Uncharacterized conserved protein (DUF2363)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      39535802..39546881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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