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    Ormdl2 ORM1-like 2 (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 66844, updated on 28-Aug-2018

    Summary

    Official Symbol
    Ormdl2provided by MGI
    Official Full Name
    ORM1-like 2 (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1914094
    See related
    Ensembl:ENSMUSG00000025353
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    0610012C09Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 24.4), genital fat pad adult (RPKM 19.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ormdl2 in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (128817457..128821632, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (128254513..128258687, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein SA, pseudogene 2 Neighboring gene matrix metallopeptidase 19 Neighboring gene transmembrane protein 198b Neighboring gene DnaJ heat shock protein family (Hsp40) member C14 Neighboring gene SAP domain containing ribonucleoprotein Neighboring gene growth differentiation factor 11 Neighboring gene CD63 antigen

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cellular sphingolipid homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ceramide metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ceramide metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of ceramide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of ceramide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    negative regulation of sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    SPOTS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001359169.1NP_001346098.1  ORM1-like protein 2

      Status: VALIDATED

      Source sequence(s)
      AK002583, AK002824, BY167865, DV065903
      Conserved Domains (1) summary
      pfam04061
      Location:11146
      ORMDL; ORMDL family
    2. NM_001359170.1NP_001346099.1  ORM1-like protein 2

      Status: VALIDATED

      Source sequence(s)
      AC131081, AK002583, AK002824, DV065903
      Conserved Domains (1) summary
      pfam04061
      Location:11146
      ORMDL; ORMDL family
    3. NM_001359171.1NP_001346100.1  ORM1-like protein 2

      Status: VALIDATED

      Source sequence(s)
      AA672064, AK002583, AK002824, DV065903
      Conserved Domains (1) summary
      pfam04061
      Location:11146
      ORMDL; ORMDL family
    4. NM_024180.6NP_077142.1  ORM1-like protein 2

      See identical proteins and their annotated locations for NP_077142.1

      Status: VALIDATED

      Source sequence(s)
      AK002583, AK002824, DV065903
      Consensus CDS
      CCDS24295.1
      UniProtKB/Swiss-Prot
      Q9CQZ0
      Related
      ENSMUSP00000026409.3, ENSMUST00000026409.4
      Conserved Domains (1) summary
      pfam04061
      Location:11146
      ORMDL; ORMDL family

    RNA

    1. NR_152853.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK002583, AK002824, DV065903

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      128817457..128821632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513959.2XP_006514022.1  ORM1-like protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q9CQZ0
      Related
      ENSMUSP00000151697.1, ENSMUST00000219524.1
      Conserved Domains (1) summary
      pfam04061
      Location:11146
      ORMDL; ORMDL family
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