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    Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [ Mus musculus (house mouse) ]

    Gene ID: 26900, updated on 5-Aug-2018

    Summary

    Official Symbol
    Ddx3yprovided by MGI
    Official Full Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linkedprovided by MGI
    Primary source
    MGI:MGI:1349406
    See related
    Ensembl:ENSMUSG00000069045 Vega:OTTMUSG00000045279
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Dby; D1Pas1-rs1; 8030469F12Rik
    Expression
    Broad expression in CNS E18 (RPKM 5.2), liver E14.5 (RPKM 4.5) and 17 other tissues See more

    Genomic context

    See Ddx3y in Genome Data Viewer
    Location:
    Y; Y A1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) Y NC_000087.7 (1260715..1286628, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) Y NC_000087.6 (597158..623056, complement)

    Chromosome Y - NC_000087.7Genomic Context describing neighboring genes Neighboring gene testis specific protein-Y encoded, pseudogene Neighboring gene ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome Neighboring gene predicted gene, 39552 Neighboring gene predicted gene 4017 Neighboring gene ring finger and WD repeat domain 2 pseudogene Neighboring gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor pseudogene Neighboring gene ubiquitin specific peptidase 9, Y chromosome

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ATP-dependent RNA helicase DDX3Y
    Names
    D1Pas1 related sequence 1
    DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide, Y chromosome
    DEAD box protein 3, Y-chromosomal
    DEAD-box RNA helicase DEAD2
    mDEAD2
    NP_036138.1
    XP_006531666.1
    XP_006531670.1
    XP_011246894.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012008.2NP_036138.1  ATP-dependent RNA helicase DDX3Y

      See identical proteins and their annotated locations for NP_036138.1

      Status: VALIDATED

      Source sequence(s)
      AJ007376, AK160604, AK162630, BB671323, BC051046, CD552910
      Consensus CDS
      CCDS30543.1
      UniProtKB/Swiss-Prot
      Q62095
      UniProtKB/TrEMBL
      Q3TUR4
      Related
      ENSMUSP00000088729.5, OTTMUSP00000066311, ENSMUST00000091190.11, OTTMUST00000118924
      Conserved Domains (4) summary
      cd00268
      Location:181403
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:66609
      PTZ00110; helicase; Provisional
      pfam00271
      Location:425535
      Helicase_C; Helicase conserved C-terminal domain
      pfam06273
      Location:87171
      eIF-4B; Plant specific eukaryotic initiation factor 4B

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000087.7 Reference GRCm38.p4 C57BL/6J

      Range
      1260715..1286628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531603.2XP_006531666.1  ATP-dependent RNA helicase DDX3Y isoform X1

      Conserved Domains (4) summary
      cd00268
      Location:181403
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:66608
      PTZ00110; helicase; Provisional
      pfam00271
      Location:425535
      Helicase_C; Helicase conserved C-terminal domain
      pfam06273
      Location:87171
      eIF-4B; Plant specific eukaryotic initiation factor 4B
    2. XM_006531607.3XP_006531670.1  ATP-dependent RNA helicase DDX3Y isoform X3

      Conserved Domains (3) summary
      smart00487
      Location:9232
      DEXDc; DEAD-like helicases superfamily
      cd00268
      Location:3218
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam00271
      Location:240350
      Helicase_C; Helicase conserved C-terminal domain
    3. XM_011248592.2XP_011246894.1  ATP-dependent RNA helicase DDX3Y isoform X2

      Conserved Domains (4) summary
      cd00268
      Location:167389
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      PTZ00110
      Location:52595
      PTZ00110; helicase; Provisional
      pfam00271
      Location:411521
      Helicase_C; Helicase conserved C-terminal domain
      pfam06273
      Location:73157
      eIF-4B; Plant specific eukaryotic initiation factor 4B
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