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FAM230I family with sequence similarity 230 member I [ Homo sapiens (human) ]

Gene ID: 388882, updated on 13-May-2022

Summary

Official Symbol
FAM230Iprovided by HGNC
Official Full Name
family with sequence similarity 230 member Iprovided by HGNC
Primary source
HGNC:HGNC:52446
See related
Ensembl:ENSG00000178248 AllianceGenome:HGNC:52446
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01658
Expression
Biased expression in testis (RPKM 3.8), prostate (RPKM 0.5) and 1 other tissue See more
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Genomic context

See FAM230I in Genome Data Viewer
Location:
22q11.23
Exon count:
13
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23462086..23486980, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23884837..23909741, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23804273..23829167, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ZDHHC8B, pseudogene Neighboring gene coiled-coil domain containing 188B, pseudogene Neighboring gene long intergenic non-protein coding RNA 1659 Neighboring gene long intergenic non-protein coding RNA 2557 Neighboring gene uncharacterized LOC107985580

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1658

Clone Names

  • AP000345.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110539.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000344, AP000345, KF457386
    Related
    ENST00000320372.9
  2. NR_165488.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000344, AP000345, KF457386
  3. NR_165489.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000344, AP000345, KF457386
  4. NR_165490.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000344, AP000345, KF457386

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23462086..23486980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187632.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    108044..132939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23884837..23909741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)