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    OSTCP1 oligosaccharyltransferase complex subunit pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 202459, updated on 13-May-2022

    Summary

    Official Symbol
    OSTCP1provided by HGNC
    Official Full Name
    oligosaccharyltransferase complex subunit pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:30530
    See related
    Ensembl:ENSG00000243775 AllianceGenome:HGNC:30530
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DC2L; OSTCL
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See OSTCP1 in Genome Data Viewer
    Location:
    6q25.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (158841117..158857632, complement)
    110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (160086575..160103065, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (159262149..159278664, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 3 Neighboring gene microRNA 3918 Neighboring gene ezrin Neighboring gene EZR antisense RNA 1 Neighboring gene uncharacterized LOC124901448 Neighboring gene long intergenic non-protein coding RNA 2901 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028496.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL589931, BC024224
      Related
      ENST00000522287.1

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      158841117..158857632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      160086575..160103065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_145303.3: Suppressed sequence

      Description
      NM_145303.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.