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    Taf9b TATA-box binding protein associated factor 9B [ Mus musculus (house mouse) ]

    Gene ID: 407786, updated on 9-Sep-2018

    Summary

    Official Symbol
    Taf9bprovided by MGI
    Official Full Name
    TATA-box binding protein associated factor 9Bprovided by MGI
    Primary source
    MGI:MGI:3039562
    See related
    Ensembl:ENSMUSG00000047242 Vega:OTTMUSG00000018278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Taf9l; BC066223
    Expression
    Ubiquitous expression in bladder adult (RPKM 7.0), cortex adult (RPKM 6.5) and 25 other tissues See more
    Orthologs

    Genomic context

    See Taf9b in Genome Data Viewer
    Location:
    X; X D
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (106206874..106221158, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (103402213..103416497, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene TM2 domain containing 2 pseudogene Neighboring gene phosphoglycerate kinase 1 Neighboring gene fibronectin type III domain containing 3C2 Neighboring gene fibronectin type III domain containing 3C2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to histone acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA-templated transcription, initiation IEA
    Inferred from Electronic Annotation
    more info
     
    histone H3 acetylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of cell growth ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    SAGA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor TFIID complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor TFTC complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 9B
    Names
    TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor
    TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
    transcription-associated factor TAFII31L
    NP_001001176.2
    NP_001161460.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001176.2NP_001001176.2  transcription initiation factor TFIID subunit 9B isoform 2

      See identical proteins and their annotated locations for NP_001001176.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      BC051635, BC066223, CA559941
      Consensus CDS
      CCDS30340.1
      UniProtKB/Swiss-Prot
      Q6NZA9
      Related
      ENSMUSP00000059751.8, OTTMUSP00000019856, ENSMUST00000055497.14, OTTMUST00000044169
      Conserved Domains (1) summary
      cd07979
      Location:13129
      TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    2. NM_001167988.1NP_001161460.1  transcription initiation factor TFIID subunit 9B isoform 1

      See identical proteins and their annotated locations for NP_001161460.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK131710, BC066223
      Consensus CDS
      CCDS53170.1
      UniProtKB/Swiss-Prot
      Q6NZA9
      UniProtKB/TrEMBL
      A2AP82
      Related
      ENSMUSP00000109123.2, OTTMUSP00000019857, ENSMUST00000113495.8, OTTMUST00000044170
      Conserved Domains (1) summary
      cd07979
      Location:57173
      TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

      Range
      106206874..106221158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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