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    Ino80d INO80 complex subunit D [ Mus musculus (house mouse) ]

    Gene ID: 227195, updated on 23-May-2018

    Summary

    Official Symbol
    Ino80dprovided by MGI
    Official Full Name
    INO80 complex subunit Dprovided by MGI
    Primary source
    MGI:MGI:3027003
    See related
    Ensembl:ENSMUSG00000040865 Vega:OTTMUSG00000002593
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC010584; 7330405I11; A430093A21Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 7.5), lung adult (RPKM 4.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ino80d in Genome Data Viewer
    Location:
    1; 1 C2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (63047801..63114267, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (63094375..63160841, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35252 Neighboring gene predicted gene, 38513 Neighboring gene ribosomal protein S27, pseudogene 1 Neighboring gene INO80 complex subunit D, opposite strand Neighboring gene NADH:ubiquinone oxidoreductase core subunit S1 Neighboring gene small nucleolar RNA, H/ACA box 41 Neighboring gene eukaryotic translation elongation factor 1 beta 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    DNA recombination IEA
    Inferred from Electronic Annotation
    more info
     
    DNA repair IEA
    Inferred from Electronic Annotation
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    cellular response to DNA damage stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081436.2NP_001074905.1  INO80 complex subunit D isoform 2

      See identical proteins and their annotated locations for NP_001074905.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate splice site, which results in a downstream AUG start codon, as compared to variant 1. The resulting isoform (2) has a shorter N-terminus, as compared to isoform 1.
      Source sequence(s)
      AK049468, AL645685, BC099533, BY278053
      Consensus CDS
      CCDS35594.1
      UniProtKB/Swiss-Prot
      Q66JY2
      UniProtKB/TrEMBL
      B1AT32
      Related
      ENSMUSP00000127378.1, ENSMUST00000172416.7
      Conserved Domains (2) summary
      pfam13891
      Location:337401
      zf-C3Hc3H; Potential DNA-binding domain
      pfam17082
      Location:61173
      Spc29; Spindle Pole Component 29
    2. NM_001114609.1NP_001108081.1  INO80 complex subunit D isoform 1

      See identical proteins and their annotated locations for NP_001108081.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant is the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK049468, AL645685, BC099533, BQ030826, BY278053
      Consensus CDS
      CCDS48277.1
      UniProtKB/Swiss-Prot
      Q66JY2
      UniProtKB/TrEMBL
      E9Q9Q0
      Related
      ENSMUSP00000130864.1, ENSMUST00000165066.7
      Conserved Domains (2) summary
      pfam13891
      Location:1879
      zf-C3Hc3H; Potential DNA-binding domain
      pfam17082
      Location:166278
      Spc29; Spindle Pole Component 29

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      63047801..63114267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006495946.2XP_006496009.1  INO80 complex subunit D isoform X1

      See identical proteins and their annotated locations for XP_006496009.1

      UniProtKB/TrEMBL
      E9Q9Q0
      Conserved Domains (2) summary
      pfam13891
      Location:1879
      zf-C3Hc3H; Potential DNA-binding domain
      pfam17082
      Location:166278
      Spc29; Spindle Pole Component 29
    2. XM_006495947.2XP_006496010.1  INO80 complex subunit D isoform X1

      See identical proteins and their annotated locations for XP_006496010.1

      UniProtKB/TrEMBL
      E9Q9Q0
      Conserved Domains (2) summary
      pfam13891
      Location:1879
      zf-C3Hc3H; Potential DNA-binding domain
      pfam17082
      Location:166278
      Spc29; Spindle Pole Component 29
    3. XM_006495948.2XP_006496011.1  INO80 complex subunit D isoform X1

      See identical proteins and their annotated locations for XP_006496011.1

      UniProtKB/TrEMBL
      E9Q9Q0
      Conserved Domains (2) summary
      pfam13891
      Location:1879
      zf-C3Hc3H; Potential DNA-binding domain
      pfam17082
      Location:166278
      Spc29; Spindle Pole Component 29
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