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Hdlbp high density lipoprotein (HDL) binding protein [ Mus musculus (house mouse) ]

Gene ID: 110611, updated on 5-Aug-2018

Summary

Official Symbol
Hdlbpprovided by MGI
Official Full Name
high density lipoprotein (HDL) binding proteinprovided by MGI
Primary source
MGI:MGI:99256
See related
Ensembl:ENSMUSG00000034088 Vega:OTTMUSG00000048654
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA960365; AI118566; D1Ertd101e; 1110005P14Rik
Expression
Ubiquitous expression in placenta adult (RPKM 70.8), limb E14.5 (RPKM 50.6) and 28 other tissues See more
Orthologs

Genomic context

See Hdlbp in Genome Data Viewer
Location:
1 D; 1 47.24 cM
Exon count:
32
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (93405940..93478917, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (95302517..95375385, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 7 Neighboring gene microRNA 6345 Neighboring gene anoctamin 7 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene septin 2 Neighboring gene FERM, RhoGEF and pleckstrin domain protein 2 Neighboring gene predicted gene, 41920

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid transport IEA
Inferred from Electronic Annotation
more info
 
steroid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vigilin
Names
HDL-binding protein
high density lipoprotein-binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301364.1NP_001288293.1  vigilin

    See identical proteins and their annotated locations for NP_001288293.1

    Status: VALIDATED

    Source sequence(s)
    AC108412, AK132355, AK161663, BB854571, CK638858
    Consensus CDS
    CCDS15189.1
    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7, Q3V1M8
    Related
    ENSMUSP00000043047.7, OTTMUSP00000067769, ENSMUST00000042498.13, OTTMUST00000124601
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  2. NM_001357556.1NP_001344485.1  vigilin

    Status: VALIDATED

    Source sequence(s)
    AC108412
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  3. NM_133808.5NP_598569.1  vigilin

    See identical proteins and their annotated locations for NP_598569.1

    Status: VALIDATED

    Source sequence(s)
    AC108412
    Consensus CDS
    CCDS15189.1
    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7
    Related
    ENSMUSP00000127903.1, OTTMUSP00000067768, ENSMUST00000170883.7, OTTMUST00000124600
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

    Range
    93405940..93478917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529074.2XP_006529137.1  vigilin isoform X1

    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  2. XM_006529076.2XP_006529139.1  vigilin isoform X1

    See identical proteins and their annotated locations for XP_006529139.1

    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  3. XM_006529077.3XP_006529140.1  vigilin isoform X1

    See identical proteins and their annotated locations for XP_006529140.1

    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7
    Related
    ENSMUSP00000139671.1, OTTMUSP00000067770, ENSMUST00000186164.6, OTTMUST00000124602
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
  4. XM_006529075.2XP_006529138.1  vigilin isoform X1

    See identical proteins and their annotated locations for XP_006529138.1

    UniProtKB/Swiss-Prot
    Q8VDJ3
    UniProtKB/TrEMBL
    Q3U4Z7
    Conserved Domains (1) summary
    cd02394
    Location:655717
    vigilin_like_KH; K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has ...
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