Format

Send to:

Choose Destination
    • Showing Current items.

    Pcdhb16 protocadherin beta 16 [ Mus musculus (house mouse) ]

    Gene ID: 93887, updated on 31-Jan-2019

    Summary

    Official Symbol
    Pcdhb16provided by MGI
    Official Full Name
    protocadherin beta 16provided by MGI
    Primary source
    MGI:MGI:2136752
    See related
    Ensembl:ENSMUSG00000047910
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pcdhb8; PcdhbP

    Genomic context

    See Pcdhb16 in Genome Data Viewer
    Location:
    18; 18 B3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (37477768..37483038)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (37637422..37642692)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 37013 Neighboring gene predicted gene, 38666 Neighboring gene predicted gene, 38667 Neighboring gene protocadherin beta 14 Neighboring gene protocadherin beta 15 Neighboring gene protocadherin beta 17 Neighboring gene protocadherin beta 18

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
    Non-traceable Author Statement
    more info
    PubMed 
    cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    chemical synaptic transmission TAS
    Traceable Author Statement
    more info
    PubMed 
    synapse assembly TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    photoreceptor connecting cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor disc membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protocadherin beta 16
    Names
    Protocadherin-betaP
    cell-cell adhesion molecule

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053141.3NP_444371.3  protocadherin beta 16 precursor

      See identical proteins and their annotated locations for NP_444371.3

      Status: VALIDATED

      Source sequence(s)
      AK036829, BC116625, BP762533, CJ182908
      Consensus CDS
      CCDS29182.1
      UniProtKB/TrEMBL
      Q8CB45, Q91Y03
      Related
      ENSMUSP00000056347.5, ENSMUST00000051442.6
      Conserved Domains (3) summary
      cd11304
      Location:248344
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:32113
      Cadherin_2; Cadherin-like
      pfam16492
      Location:687770
      Cadherin_C_2; Cadherin cytoplasmic C-terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      37477768..37483038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center