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    AVA-P1 ATPase, F0/V0 complex, subunit C protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829624, updated on 27-Sep-2019

    Summary

    Gene symbol
    AVA-P1
    Gene description
    ATPase, F0/V0 complex, subunit C protein
    Primary source
    Araport:AT4G34720
    Locus tag
    AT4G34720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVHA-C1; T4L20.300; VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID; VACUOLAR H+-PUMPING ATPASE C1; VHA-C1
    Summary
    vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)

    Genomic context

    See AVA-P1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (16567792..16569334, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene arginine decarboxylase 2 Neighboring gene ncRNA Neighboring gene ribosome-binding factor A family protein Neighboring gene GLN phosphoribosyl pyrophosphate amidotransferase 2

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    NM_001342299.1
    NM_119638.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    ATPase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    proton-transporting ATPase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    chloroplast ISM
    Inferred from Sequence Model
    more info
     
    integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vacuole IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ATPase, F0/V0 complex, subunit C protein
    NP_195198.1
    • AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16567792..16569334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119638.3NP_195198.1  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195198.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DH92, P0DH93, P0DH94
      UniProtKB/TrEMBL
      A0A178VXD8
      Conserved Domains (2) summary
      TIGR01100
      Location:12120
      V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
      cd18176
      Location:88155
      ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins
    2. NM_001342299.1NP_001329512.1  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7X4
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