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    AT4G02620 vacuolar ATPase subunit F family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828221, updated on 10-Oct-2019

    Summary

    Gene symbol
    AT4G02620
    Gene description
    vacuolar ATPase subunit F family protein
    Primary source
    Araport:AT4G02620
    Locus tag
    AT4G02620
    Gene type
    protein coding
    RNA name
    vacuolar ATPase subunit F family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10P11.25; T10P11_25; VHA -F

    Genomic context

    See AT4G02620 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (1149248..1151355, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Seven transmembrane MLO family protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene bZIP transcription factor family protein

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    • Homologs of the AT4G02620 gene: The AT4G02620 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, rice, and frog.
    • Orthologs
    NM_116496.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    ATPase coupled ion transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol HDA PubMed 
    membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    proton-transporting V-type ATPase, V1 domain IEA
    Inferred from Electronic Annotation
    more info
     
    vacuolar membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    vacuole IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    vacuolar ATPase subunit F family protein
    NP_192171.1
    • vacuolar ATPase subunit F family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit F, eukaryotic (InterPro:IPR005772), ATPase, V1/A1 complex, subunit F (InterPro:IPR008218); Has 520 Blast hits to 520 proteins in 240 species: Archae - 39; Bacteria - 0; Metazoa - 211; Fungi - 130; Plants - 61; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1149248..1151355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116496.4NP_192171.1  vacuolar ATPase subunit F family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192171.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZQX4
      UniProtKB/TrEMBL
      A0A178V4M8
      Conserved Domains (1) summary
      cl00632
      Location:9122
      ATP-synt_F; ATP synthase (F/14-kDa) subunit
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