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    LOC18423656 pentatricopeptide repeat-containing protein At1g55630 [ Amborella trichopoda ]

    Gene ID: 18423656, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18423656
    Gene description
    pentatricopeptide repeat-containing protein At1g55630
    Locus tag
    AMTR_s00023p00240990
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006494943.1 (5580271..5598974, complement)

    NW_006494943.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene uncharacterized LOC105421518 Neighboring gene uncharacterized LOC18423658 Neighboring gene uncharacterized LOC110008131

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006494943.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g55630; uncharacterized protein LOC18423656

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006494943.1 Reference AMTR1.0 Primary Assembly

      Range
      5580271..5598974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020674471.1 → XP_020530130.1  uncharacterized protein LOC18423656 isoform X2

    2. XM_020674456.1 → XP_020530115.1  pentatricopeptide repeat-containing protein At1g55630 isoform X1

      UniProtKB/TrEMBL
      W1NJQ5
      Conserved Domains (4) summary
      TIGR00756
      Location:340 → 372
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:376 → 403
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:407 → 455
      PPR_2; PPR repeat family
      cl25449
      Location:201 → 241
      PPR_2; PPR repeat family

    3. XM_020674448.1 → XP_020530107.1  pentatricopeptide repeat-containing protein At1g55630 isoform X1

      UniProtKB/TrEMBL
      W1NJQ5
      Conserved Domains (4) summary
      TIGR00756
      Location:340 → 372
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:376 → 403
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:407 → 455
      PPR_2; PPR repeat family
      cl25449
      Location:201 → 241
      PPR_2; PPR repeat family

    4. XM_020674461.1 → XP_020530120.1  pentatricopeptide repeat-containing protein At1g55630 isoform X1

      UniProtKB/TrEMBL
      W1NJQ5
      Conserved Domains (4) summary
      TIGR00756
      Location:340 → 372
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:376 → 403
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:407 → 455
      PPR_2; PPR repeat family
      cl25449
      Location:201 → 241
      PPR_2; PPR repeat family

    RNA

    1. XR_002282927.1 RNA Sequence

    2. XR_002282926.1 RNA Sequence

    3. XR_002282924.1 RNA Sequence

    4. XR_002282923.1 RNA Sequence

    5. XR_002282922.1 RNA Sequence

    6. XR_002282920.1 RNA Sequence

    7. XR_002282914.1 RNA Sequence

    8. XR_002282915.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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