Format

Send to:

Choose Destination
    • Showing Current items.

    Arrdc4 arrestin domain containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 66412, updated on 8-Apr-2018
    Official Symbol
    Arrdc4provided by MGI
    Official Full Name
    arrestin domain containing 4provided by MGI
    Primary source
    MGI:MGI:1913662
    See related
    Ensembl:ENSMUSG00000042659 Vega:OTTMUSG00000029424
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV216361; 2410003C09Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 15.0), colon adult (RPKM 8.7) and 28 other tissues See more
    Orthologs
    Location:
    7; 7 C
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (68736994..68749238, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (75881880..75894124, complement)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34549 Neighboring gene tetraspanin 7 pseudogene Neighboring gene predicted gene, 34612 Neighboring gene predicted gene, 34664

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    extracellular vesicle biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of ubiquitin-protein transferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein ubiquitination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    NOT ubiquitin-dependent protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    endosome ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    arrestin domain-containing protein 4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042592.2NP_001036057.1  arrestin domain-containing protein 4 isoform 1

      See identical proteins and their annotated locations for NP_001036057.1

      Status: VALIDATED

      Source sequence(s)
      AK037198, AV245884, BY738896
      Consensus CDS
      CCDS39985.1
      UniProtKB/Swiss-Prot
      A0A0B4J1F4
      Related
      ENSMUSP00000044578.7, OTTMUSP00000037650, ENSMUST00000048068.14, OTTMUST00000072913
      Conserved Domains (2) summary
      smart01017
      Location:188315
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      pfam00339
      Location:19166
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain
    2. NM_025549.3NP_079825.2  arrestin domain-containing protein 4 isoform 2

      See identical proteins and their annotated locations for NP_079825.2

      Status: VALIDATED

      Source sequence(s)
      AK010352, AK037198, BY738896
      Consensus CDS
      CCDS52272.1
      UniProtKB/Swiss-Prot
      A0A0B4J1F4
      Related
      ENSMUSP00000112962.1, OTTMUSP00000037651, ENSMUST00000118110.2, OTTMUST00000072914
      Conserved Domains (2) summary
      smart01017
      Location:188292
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      pfam00339
      Location:23166
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      68736994..68749238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center