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    Zic5 zinc finger protein of the cerebellum 5 [ Mus musculus (house mouse) ]

    Gene ID: 65100, updated on 27-Jan-2018
    Official Symbol
    Zic5provided by MGI
    Official Full Name
    zinc finger protein of the cerebellum 5provided by MGI
    Primary source
    MGI:MGI:1929518
    See related
    Ensembl:ENSMUSG00000041703 Vega:OTTMUSG00000020976
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Opr; 1700049L20Rik
    Expression
    Biased expression in testis adult (RPKM 7.5), cerebellum adult (RPKM 5.7) and 6 other tissues See more
    Orthologs
    Location:
    14; 14 E5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (122459160..122465658, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (122858382..122864880, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene citrate lyase beta like Neighboring gene RIKEN cDNA 1700108J01 gene Neighboring gene predicted gene 5089 Neighboring gene RIKEN cDNA 2610035F20 gene Neighboring gene predicted gene, 33719 Neighboring gene zinc finger protein of the cerebellum 2

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    RNA polymerase II regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    forebrain development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neural tube closure IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    NOT positive regulation of transcription, DNA-templated IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    zinc finger protein ZIC 5
    Names
    Zic family member 5 (odd-paired homolog, Drosophila)
    odd-paired related

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022987.3NP_075363.1  zinc finger protein ZIC 5

      See identical proteins and their annotated locations for NP_075363.1

      Status: VALIDATED

      Source sequence(s)
      AC154683
      Consensus CDS
      CCDS27348.1
      UniProtKB/Swiss-Prot
      Q7TQ40
      UniProtKB/TrEMBL
      A0A0R4J0E2
      Related
      ENSMUSP00000035754.6, OTTMUSP00000023013, ENSMUST00000039118.6, OTTMUST00000049605
      Conserved Domains (4) summary
      COG5048
      Location:388550
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:424444
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:510534
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:466493
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      122459160..122465658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519357.3XP_006519420.1  zinc finger protein ZIC 5 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:437475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:390408
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:437463
      zf-H2C2_2; Zinc-finger double domain
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