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    C16orf90 chromosome 16 open reading frame 90 [ Homo sapiens (human) ]

    Gene ID: 646174, updated on 3-Apr-2018
    Official Symbol
    C16orf90provided by HGNC
    Official Full Name
    chromosome 16 open reading frame 90provided by HGNC
    Primary source
    HGNC:HGNC:34455
    See related
    Ensembl:ENSG00000215131 Vega:OTTHUMG00000154627
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 8.1) See more
    Orthologs
    See C16orf90 in Genome Data Viewer
    Location:
    16p13.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 16 NC_000016.10 (3493484..3496652, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3543484..3545758, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 597 Neighboring gene N(alpha)-acetyltransferase 60, NatF catalytic subunit Neighboring gene microRNA 6126 Neighboring gene ribosomal protein L18 pseudogene 12 Neighboring gene clusterin associated protein 1 Neighboring gene uncharacterized LOC101929732 Neighboring gene NLR family CARD domain containing 3

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Preferred Names
    uncharacterized protein C16orf90

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080524.1NP_001073993.1  uncharacterized protein C16orf90 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AC004224
      Consensus CDS
      CCDS45397.1
      UniProtKB/Swiss-Prot
      A8MZG2
      Related
      ENSP00000401335.3, OTTHUMP00000210840, ENST00000437192.7, OTTHUMT00000346319
      Conserved Domains (1) summary
      pfam15486
      Location:16173
      DUF4644; Domain of unknown function (DUF4644)
    2. NM_001353382.1NP_001340311.1  uncharacterized protein C16orf90 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a.
      Source sequence(s)
      AC004224
      Conserved Domains (1) summary
      pfam15486
      Location:9166
      DUF4644; Domain of unknown function (DUF4644)
    3. NM_001353383.1NP_001340312.1  uncharacterized protein C16orf90 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
      Source sequence(s)
      AC004224, HY025685
      Conserved Domains (1) summary
      pfam15486
      Location:186
      DUF4644; Domain of unknown function (DUF4644)
    4. NM_001353384.1NP_001340313.1  uncharacterized protein C16orf90 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
      Source sequence(s)
      AC004224
      Conserved Domains (1) summary
      pfam15486
      Location:186
      DUF4644; Domain of unknown function (DUF4644)
    5. NM_001353385.1NP_001340314.1  uncharacterized protein C16orf90 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
      Source sequence(s)
      AC004224
      Conserved Domains (1) summary
      pfam15486
      Location:186
      DUF4644; Domain of unknown function (DUF4644)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p12 Primary Assembly

      Range
      3493484..3496652 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024450393.1XP_024306161.1  uncharacterized protein C16orf90 isoform X2

      Conserved Domains (1) summary
      pfam15486
      Location:186
      DUF4644; Domain of unknown function (DUF4644)
    2. XM_024450392.1XP_024306160.1  uncharacterized protein C16orf90 isoform X1

      Related
      ENSP00000382553.3, ENST00000399645.3
      Conserved Domains (1) summary
      pfam15486
      Location:31188
      DUF4644; Domain of unknown function (DUF4644)
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