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    ARL13A ADP ribosylation factor like GTPase 13A [ Homo sapiens (human) ]

    Gene ID: 392509, updated on 8-Apr-2018
    Official Symbol
    ARL13Aprovided by HGNC
    Official Full Name
    ADP ribosylation factor like GTPase 13Aprovided by HGNC
    Primary source
    HGNC:HGNC:31709
    See related
    Ensembl:ENSG00000174225 Vega:OTTHUMG00000022013
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ARL13; dJ341D10.2
    Expression
    Biased expression in testis (RPKM 2.4), skin (RPKM 0.2) and 1 other tissue See more
    Orthologs
    Location:
    Xq22.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) X NC_000023.11 (100969011..100990831)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (100224697..100245820)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene Neighboring gene XK related, X-linked Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2 pseudogene Neighboring gene tRNA methyltransferase 2 homolog B Neighboring gene transmembrane protein 35A Neighboring gene centromere protein I

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Jun 15 11:32:44 2016
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    ADP-ribosylation factor-like protein 13A
    Names
    ADP-ribosylation factor-like 13
    ADP-ribosylation factor-like 13A

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162491.1NP_001155963.1  ADP-ribosylation factor-like protein 13A

      See identical proteins and their annotated locations for NP_001155963.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) encodes the functional protein.
      Source sequence(s)
      AK301813, AW118931, BC140808
      Consensus CDS
      CCDS55463.1
      UniProtKB/Swiss-Prot
      Q5H913
      Related
      ENSP00000398637.2, OTTHUMP00000023662, ENST00000450049.6, OTTHUMT00000057504
      Conserved Domains (1) summary
      cd04161
      Location:23189
      Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13

    RNA

    1. NR_103708.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs at the 3' end compared to variant 3. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK301813, AW118931
    2. NR_103709.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs at the 3' end compared to variant 3. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 3, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK301813, AW118931, DC426731
      Related
      ENST00000450457.6, OTTHUMT00000378629

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p12 Primary Assembly

      Range
      100969011..100990831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011530950.2XP_011529252.1  ADP-ribosylation factor-like protein 13A isoform X1

      Conserved Domains (1) summary
      cd04161
      Location:23189
      Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13
    2. XM_011530951.2XP_011529253.1  ADP-ribosylation factor-like protein 13A isoform X2

      Conserved Domains (1) summary
      cl21455
      Location:23126
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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