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    Rabepk Rab9 effector protein with kelch motifs [ Mus musculus (house mouse) ]

    Gene ID: 227746, updated on 27-Jan-2018
    Official Symbol
    Rabepkprovided by MGI
    Official Full Name
    Rab9 effector protein with kelch motifsprovided by MGI
    Primary source
    MGI:MGI:2139530
    See related
    Ensembl:ENSMUSG00000070953 Vega:OTTMUSG00000012015
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C87311; Rab9p40; AV073337; 8430412M01Rik; 9530020D24Rik
    Expression
    Broad expression in testis adult (RPKM 48.4), genital fat pad adult (RPKM 5.2) and 18 other tissues See more
    Orthologs
    Location:
    2; 2 B
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (34774782..34800164, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (34634186..34655311, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34372 Neighboring gene DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene Neighboring gene GTPase activating protein and VPS9 domains 1 Neighboring gene heat shock protein 5 Neighboring gene F-box and WD-40 domain protein 2 Neighboring gene predicted gene, 34653

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    rab9 effector protein with kelch motifs
    Names
    Rab9 effector p40

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145522.4NP_663497.2  rab9 effector protein with kelch motifs

      See identical proteins and their annotated locations for NP_663497.2

      Status: VALIDATED

      Source sequence(s)
      AK035343, AL929106
      Consensus CDS
      CCDS15951.1
      UniProtKB/Swiss-Prot
      Q8VCH5
      Related
      ENSMUSP00000122360.1, OTTMUSP00000012898, ENSMUST00000145903.7, OTTMUST00000028502
      Conserved Domains (4) summary
      smart00612
      Location:264309
      Kelch; Kelch domain
      sd00038
      Location:94143
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:200243
      Kelch_1; Kelch motif
      pfam13415
      Location:157209
      Kelch_3; Galactose oxidase, central domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      34774782..34800164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317453.1XP_017172942.1  rab9 effector protein with kelch motifs isoform X4

    2. XM_006497984.3XP_006498047.1  rab9 effector protein with kelch motifs isoform X1

      Conserved Domains (4) summary
      smart00612
      Location:263308
      Kelch; Kelch domain
      sd00038
      Location:94142
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:199242
      Kelch_1; Kelch motif
      pfam13415
      Location:156208
      Kelch_3; Galactose oxidase, central domain
    3. XM_006497986.2XP_006498049.1  rab9 effector protein with kelch motifs isoform X3

      See identical proteins and their annotated locations for XP_006498049.1

      Conserved Domains (4) summary
      smart00612
      Location:189234
      Kelch; Kelch domain
      sd00038
      Location:1968
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:125168
      Kelch_1; Kelch motif
      pfam13415
      Location:82134
      Kelch_3; Galactose oxidase, central domain
    4. XM_006497989.2XP_006498052.1  rab9 effector protein with kelch motifs isoform X6

      Conserved Domains (4) summary
      smart00612
      Location:137182
      Kelch; Kelch domain
      sd00038
      Location:2070
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:73116
      Kelch_1; Kelch motif
      pfam13415
      Location:3082
      Kelch_3; Galactose oxidase, central domain
    5. XM_006497985.3XP_006498048.1  rab9 effector protein with kelch motifs isoform X2

      UniProtKB/TrEMBL
      B0R0S4
      Related
      ENSMUSP00000113099.1, OTTMUSP00000041318, ENSMUST00000118108.1, OTTMUST00000028507
      Conserved Domains (4) summary
      smart00612
      Location:256301
      Kelch; Kelch domain
      sd00038
      Location:86135
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:192235
      Kelch_1; Kelch motif
      pfam13415
      Location:149201
      Kelch_3; Galactose oxidase, central domain
    6. XM_006497987.3XP_006498050.1  rab9 effector protein with kelch motifs isoform X3

      See identical proteins and their annotated locations for XP_006498050.1

      Conserved Domains (4) summary
      smart00612
      Location:189234
      Kelch; Kelch domain
      sd00038
      Location:1968
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:125168
      Kelch_1; Kelch motif
      pfam13415
      Location:82134
      Kelch_3; Galactose oxidase, central domain
    7. XM_006497988.2XP_006498051.1  rab9 effector protein with kelch motifs isoform X5

      Conserved Domains (4) summary
      smart00612
      Location:138183
      Kelch; Kelch domain
      sd00038
      Location:2172
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:74117
      Kelch_1; Kelch motif
      pfam13415
      Location:3183
      Kelch_3; Galactose oxidase, central domain
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