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    AT3G57350 Nucleoporin interacting component (Nup93/Nic96-like) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824902, updated on 5-Aug-2018

    Summary

    Gene symbol
    AT3G57350
    Gene description
    Nucleoporin interacting component (Nup93/Nic96-like) family protein
    Primary source
    Araport:AT3G57350
    Locus tag
    AT3G57350
    Gene type
    protein coding
    RNA name
    Nucleoporin interacting component (Nup93/Nic96-like) family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

    Genomic context

    See AT3G57350 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (21220387..21225424, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene threonine-tRNA ligase 2 Neighboring gene autoinhibited Ca2+-ATPase 11 Neighboring gene DnaJ heat shock amino-terminal domain protein (DUF1977) Neighboring gene ncRNA Neighboring gene tRNA-splicing endonuclease subunit Neighboring gene Cyclin family protein Neighboring gene Glycosyltransferase family 61 protein

    Pathways from BioSystems

    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    NM_115595.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    nuclear pore complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    poly(A)+ mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Nucleoporin interacting component (Nup93/Nic96-like) family protein
    NP_191294.5
    • Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT2G41620.1); Has 310 Blast hits to 299 proteins in 130 species: Archae - 0; Bacteria - 4; Metazoa - 145; Fungi - 101; Plants - 51; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21220387..21225424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115595.7NP_191294.5  Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191294.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J284
      Conserved Domains (1) summary
      pfam04097
      Location:246849
      Nic96; Nup93/Nic96
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