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    XCT XAP5 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816650, updated on 6-Apr-2018

    Summary

    Gene symbol
    XCT
    Gene description
    XAP5 family protein
    Primary source
    Araport:AT2G21150
    Locus tag
    AT2G21150
    Gene type
    protein coding
    RNA name
    XAP5 family protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26H11.9; F26H11_9; XAP5 CIRCADIAN TIMEKEEPER
    Summary
    XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized.

    Genomic context

    See XCT in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (9065154..9068228)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene proline-rich protein 2 Neighboring gene Translocon-associated protein (TRAP), alpha subunit Neighboring gene triosephosphate isomerase Neighboring gene miscRNA

    General gene information

    Homology

    NM_127685.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    ethylene-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    production of miRNAs involved in gene silencing by miRNA IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to blue light IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to red light IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    rhythmic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    XAP5 family protein
    NP_179711.2
    • XAP5 CIRCADIAN TIMEKEEPER (XCT); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, response to blue light, response to red light, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: XAP5 protein (InterPro:IPR007005); Has 1721 Blast hits to 1474 proteins in 237 species: Archae - 2; Bacteria - 40; Metazoa - 614; Fungi - 190; Plants - 85; Viruses - 22; Other Eukaryotes - 768 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9065154..9068228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127685.4NP_179711.2  XAP5 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179711.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H110
      UniProtKB/TrEMBL
      A0A178VXZ7
      Conserved Domains (1) summary
      pfam04921
      Location:113334
      XAP5; XAP5, circadian clock regulator
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