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    cox2 cytochrome c oxidase subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 6450161, updated on 13-Oct-2018

    Summary

    Gene symbol
    cox2
    Gene description
    cytochrome c oxidase subunit 2
    Locus tag
    OrsajM_p25
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group (cultivar: Nipponbare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

    Genomic context

    See cox2 in Genome Data Viewer
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) MT (non-nuclear) NC_011033.1 (212413..214470)

    Chromosome MT - NC_011033.1Genomic Context describing neighboring genes Neighboring gene tRNA Neighboring gene NADH dehydrogenase subunit 4 Neighboring gene orf161 Neighboring gene orf152b

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_011033.1 Chromosome MT Reference IRGSP-1.0 non-nuclear

    Pathways from BioSystems

    General gene information

    Homology

    • Homologs of the cox2 gene: The cox2 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, A.thaliana, rice, and frog.

    Miscellaneous features

    • Loc: 212426 C to U RNA editing
    • Loc: 212442 C to U RNA editing
    • Loc: 212445 C to U RNA editing
    • Loc: 212489 C to U RNA editing
    • Loc: 212556 C to U RNA editing
    • Loc: 212579 C to U RNA editing
    • Loc: 212581 C to U RNA editing
    • Loc: 212671 C to U RNA editing
    • Loc: 212797 C to U RNA editing
    • Loc: 214136 C to U RNA editing
    • Loc: 214153 C to U RNA editing
    • Loc: 214154 C to U RNA editing
    • Loc: 214169 C to U RNA editing
    • Loc: 214237 C to U RNA editing
    • Loc: 214250 C to U RNA editing
    • Loc: 214274 C to U RNA editing
    • Loc: 214307 C to U RNA editing
    • Loc: 214325 C to U RNA editing
    • Loc: 214391 C to U RNA editing

    Gene Ontology Provided by Gramene

    Component Evidence Code Pubs
    cytoplasmic vesicle RCA
    inferred from Reviewed Computational Analysis
    more info
     

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011033.1 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002000571.1 cytochrome c oxidase subunit 2 [Oryza sativa Japonica Group]

      See identical proteins and their annotated locations for YP_002000571.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8HCP6
      Conserved Domains (1) summary
      cl28076
      Location:17253
      COX2_TM; Cytochrome C oxidase subunit II, transmembrane domain
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