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    slc6a8 solute carrier family 6 (neurotransmitter transporter), member 8 [ Danio rerio (zebrafish) ]

    Gene ID: 567544, updated on 12-Aug-2018

    Summary

    Official Symbol
    slc6a8provided by ZNC
    Official Full Name
    solute carrier family 6 (neurotransmitter transporter), member 8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-071024-2
    See related
    Ensembl:ENSDARG00000043646 Vega:OTTDARG00000026297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    chot1
    Orthologs

    Genomic context

    See slc6a8 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (9051721..9119729, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (9013136..9081128, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 (UDP-galactose transporter), member 2 Neighboring gene B cell receptor associated protein 31 Neighboring gene pregnancy up-regulated nonubiquitous CaM kinase Neighboring gene plexin A3

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    choline transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    creatine:sodium symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neurotransmitter:sodium symporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    symporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    neurotransmitter transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    sodium- and chloride-dependent creatine transporter 1
    Names
    ct1
    solute carrier family 6 (neurotransmitter transporter, creatine), member 8

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327868.1NP_001314797.1  sodium- and chloride-dependent creatine transporter 1

      Status: VALIDATED

      Source sequence(s)
      BX284664
      Related
      ENSDARP00000038666.5, OTTDARP00000028061, ENSDART00000037922.6, OTTDART00000034860
      Conserved Domains (1) summary
      cd11509
      Location:64652
      SLC6sbd_CT1; Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      9051721..9119729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002459342.1 RNA Sequence

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