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    syt13 synaptotagmin XIII [ Danio rerio (zebrafish) ]

    Gene ID: 550345, updated on 10-Oct-2019

    Summary

    Official Symbol
    syt13provided by ZNC
    Official Full Name
    synaptotagmin XIIIprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-135
    See related
    Ensembl:ENSDARG00000012306
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:112063
    Orthologs

    Genomic context

    See syt13 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38716061..38734245)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (38444803..38463597)
    103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (40108163..40126347)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CD59 molecule (CD59 blood group) Neighboring gene F-box protein 3 Neighboring gene zinc finger protein 408 Neighboring gene coagulation factor II (thrombin)

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    clathrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phosphatidylserine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    calcium ion regulated exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cellular response to calcium ion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of calcium ion-dependent exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of dopamine secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017652.1NP_001017652.1  synaptotagmin-13 precursor

      See identical proteins and their annotated locations for NP_001017652.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093178
      UniProtKB/TrEMBL
      Q567G8
      Related
      ENSDARP00000013748.5, ENSDART00000024590.8
      Conserved Domains (2) summary
      cd08407
      Location:284419
      C2B_Synaptotagmin-13; C2 domain second repeat present in Synaptotagmin 13
      cd08677
      Location:151273
      C2A_Synaptotagmin-13; C2 domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      38716061..38734245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017356856.2XP_017212345.2  synaptotagmin-13 isoform X1

      Conserved Domains (2) summary
      cd08407
      Location:394529
      C2B_Synaptotagmin-13; C2 domain second repeat present in Synaptotagmin 13
      cd08677
      Location:261383
      C2A_Synaptotagmin-13; C2 domain
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