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    atl3 atlastin GTPase 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549349, updated on 23-Dec-2019

    Summary

    Symbol
    atl3provided by Xenbase
    Full Name
    atlastin GTPase 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1009682
    See related
    Ensembl:ENSXETG00000015642
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See atl3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (36368130..36398632)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (41102206..41124815)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene chromosome 11 open reading frame 95 Neighboring gene uncharacterized LOC105945466 Neighboring gene reticulon 3 Neighboring gene uncharacterized LOC100486597 Neighboring gene small nucleolar RNA U25 Neighboring gene small nucleolar RNA SNORD26

    Genomic regions, transcripts, and products

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016595.2NP_001016595.1  atlastin-3

      See identical proteins and their annotated locations for NP_001016595.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760588
      UniProtKB/TrEMBL
      Q28I50
      Related
      ENSXETP00000010957.1, ENSXETT00000036287.1
      Conserved Domains (2) summary
      cl20817
      Location:330415
      GBP_C; Guanylate-binding protein, C-terminal domain
      cl21455
      Location:18292
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      36368130..36398632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031900088.1XP_031755948.1  atlastin-3 isoform X1

    2. XM_031900089.1XP_031755949.1  atlastin-3 isoform X1

    3. XM_031900087.1XP_031755947.1  atlastin-3 isoform X1

    4. XM_031900090.1XP_031755950.1  atlastin-3 isoform X2

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