Format

Send to:

Choose Destination
    • Showing Current items.

    ATG16L1 autophagy related 16 like 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460022, updated on 5-Oct-2018

    Summary

    Official Symbol
    ATG16L1provided by VGNC
    Official Full Name
    autophagy related 16 like 1provided by VGNC
    Primary source
    VGNC:VGNC:10577
    Locus tag
    CK820_G0010806
    See related
    Ensembl:ENSPTRG00000013051
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See ATG16L1 in Genome Data Viewer
    Location:
    chromosome: 2B
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 2B NC_036881.1 (119851188..119895246)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 2B NC_006470.3 (238491256..238535340)

    Chromosome 2B - NC_036881.1Genomic Context describing neighboring genes Neighboring gene neuraminidase 2 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC107973962 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • NOD-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      NOD-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • NOD-like receptor signaling pathway, conserved biosystem (from KEGG)
      NOD-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    autophagy-related protein 16-1
    Names
    ATG16 autophagy related 16-like 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036881.1 Reference Clint_PTRv2 Primary Assembly

      Range
      119851188..119895246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009444577.3XP_009442852.1  autophagy-related protein 16-1 isoform X1

      See identical proteins and their annotated locations for XP_009442852.1

      Related
      ENSPTRP00000087896.1
      Conserved Domains (4) summary
      COG2319
      Location:272390
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:332622
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:344381
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    2. XM_001150112.4XP_001150112.1  autophagy-related protein 16-1 isoform X2

      See identical proteins and their annotated locations for XP_001150112.1

      UniProtKB/TrEMBL
      H2QJM7
      Related
      ENSPTRP00000022319.4
      Conserved Domains (3) summary
      cd00200
      Location:315605
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:327364
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    3. XM_001150056.4XP_001150056.1  autophagy-related protein 16-1 isoform X3

      See identical proteins and their annotated locations for XP_001150056.1

      UniProtKB/TrEMBL
      K7A431
      Related
      ENSPTRP00000090054.1
      Conserved Domains (3) summary
      cd00200
      Location:296586
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:308345
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    4. XM_001149723.5XP_001149723.1  autophagy-related protein 16-1 isoform X7

      See identical proteins and their annotated locations for XP_001149723.1

      Related
      ENSPTRP00000071877.1
      Conserved Domains (2) summary
      cd00200
      Location:152442
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:164201
      7WD40; WD40 repeat [structural motif]
    5. XM_009444578.3XP_009442853.1  autophagy-related protein 16-1 isoform X5

      See identical proteins and their annotated locations for XP_009442853.1

      Conserved Domains (3) summary
      COG2319
      Location:188446
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:188478
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:200237
      7WD40; WD40 repeat [structural motif]
    6. XM_009444579.3XP_009442854.1  autophagy-related protein 16-1 isoform X6

      See identical proteins and their annotated locations for XP_009442854.1

      Conserved Domains (3) summary
      COG2319
      Location:171429
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:171461
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:183220
      7WD40; WD40 repeat [structural motif]
    7. XM_024355146.1XP_024210914.1  autophagy-related protein 16-1 isoform X4

      Conserved Domains (4) summary
      COG2319
      Location:188306
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:248538
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:260297
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:2122
      ATG16; Autophagy protein 16 (ATG16)
    8. XM_016950729.2XP_016806218.1  autophagy-related protein 16-1 isoform X4

      Conserved Domains (4) summary
      COG2319
      Location:188306
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:248538
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:260297
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:2122
      ATG16; Autophagy protein 16 (ATG16)
    Support Center