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    LOC4351872 DNA polymerase alpha subunit B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351872, updated on 9-Aug-2018

    Summary

    Gene symbol
    LOC4351872
    Gene description
    DNA polymerase alpha subunit B
    Locus tag
    OSNPB_120242900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 2.8), flowers (RPKM 2.0) and 5 other tissues See more

    Genomic context

    See LOC4351872 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (7921620..7926776, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene 3-oxoacyl-[acyl-carrier-protein] reductase 4 Neighboring gene TLC domain-containing protein At5g14285 Neighboring gene formin-like protein 5 Neighboring gene stromal 70 kDa heat shock-related protein, chloroplastic

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    DNA polymerase alpha subunit B
    Names
    Os12g0242900

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7921620..7926776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763490.2XP_015618976.1  DNA polymerase alpha subunit B

      Conserved Domains (2) summary
      pfam04042
      Location:364575
      DNA_pol_E_B; DNA polymerase alpha/epsilon subunit B
      pfam08418
      Location:25157
      Pol_alpha_B_N; DNA polymerase alpha subunit B N-terminal
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