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    LOC4349719 proteasome adapter and scaffold protein ECM29 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349719, updated on 9-Aug-2018

    Summary

    Gene symbol
    LOC4349719
    Gene description
    proteasome adapter and scaffold protein ECM29
    Locus tag
    OSNPB_110137250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.1), flowers (RPKM 10.1) and 6 other tissues See more

    Genomic context

    See LOC4349719 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1718517..1735142, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene probable auxin efflux carrier component 1b Neighboring gene U3 small nucleolar ribonucleoprotein protein MPP10 Neighboring gene hydroxymethylglutaryl-CoA lyase, mitochondrial Neighboring gene general transcription factor IIE subunit 1 Neighboring gene transcription initiation factor IIE subunit alpha

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    proteasome adapter and scaffold protein ECM29
    Names
    Os11g0137250
    Os11g0137300
    proteasome-associated protein ECM29 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1718517..1735142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761587.2XP_015617073.1  proteasome adapter and scaffold protein ECM29

      UniProtKB/TrEMBL
      Q2RAU4
      Conserved Domains (2) summary
      pfam13001
      Location:21502
      Ecm29; Proteasome stabilizer
      sd00044
      Location:14431473
      HEAT; HEAT repeat [structural motif]
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