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    LOC4349273 DDB1- and CUL4-associated factor 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349273, updated on 9-Aug-2018

    Summary

    Gene symbol
    LOC4349273
    Gene description
    DDB1- and CUL4-associated factor 8
    Locus tag
    OSNPB_100544500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 42.4), roots after flowering (RPKM 38.1) and 6 other tissues See more

    Genomic context

    See LOC4349273 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21253553..21256623)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene transcription factor TDR-like Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC112936668 Neighboring gene NEP1-interacting protein 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    Gene Ontology Provided by Gramene

    Component Evidence Code Pubs
    mitochondrion RCA
    inferred from Reviewed Computational Analysis
    more info
     

    General protein information

    Preferred Names
    DDB1- and CUL4-associated factor 8
    Names
    Os10g0544500

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21253553..21256623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759406.2XP_015614892.1  DDB1- and CUL4-associated factor 8

      UniProtKB/TrEMBL
      Q7G1Q5
      Conserved Domains (3) summary
      COG2319
      Location:51425
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:6096
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:48396
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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